Published works during my research

 

 

Eriksson, M.A.L. & Laaksonen, A. (1992) A molecular dynamics study of the conformational changes and hydration of left-handed d(CGCGCGCGCGCG)2 in a nonsalt solution. Biopolymers. 32, 1035-1059.

 

Eriksson, M.A.L., Berglund, H., Härd, T. & Nilsson, L. (1993) A comparison of 15N NMR relaxation measurements with a molecular dynamics simulation: Backbone dynamics of the glucocorticoid receptor DNA-binding domain. Proteins: Struct. Funct. & Genet. 17, 375-390.

 

Eriksson, M., Härd, T. & Nilsson, L. (1994) Molecular dynamics of a DNA-binding protein free and in complex with DNA. In: Computational Approaches in Supramoleular Chemistry. (Ed. G. Wipff), NATO ASI Series vol. 426, Kluwer Dordrecht. 441-456.

 

Eriksson, M.A.L., Härd, T. & Nilsson, L. (1995) Molecular dynamics simulations of the glucocorticoid receptor DNA-binding domain in complex with DNA and free in solution. Biophys. J. 68, 402-426.

 

Eriksson, M.A.L., Härd, T. & Nilsson, L. (1995) On the pH-dependence of amide proton exchange rates in proteins. Biophys. J. 69, 329-339.

 

Eriksson Mats (1995) PhD-thesis 'Biophysical properties of Biological Macromolecules. Approaches using Molecular Dynamics as the Main Tool'. Karolinska Institute. IBSN 91-628-1605-5

 

Eriksson, M.A.L. & Nilsson, L. (1995) Structure, thermodynamics and cooperativity of the glucocorticoid receptor DNA-binding domain in complex with different response elements. Molecular dynamics simulation and free energy perturbation studies. J. Mol. Biol. 253, 453-472.

 

Eriksson, M.A.L. & Nilsson, L. (1997) Computer simulations of protein-DNA interactions. In: “Theoretical and computational methods in genome research.” Ed. S. Suhai, Plenum Publishing Corp., New York. pp 279-286.

 

Eriksson, M.A.L. & Nilsson, L. (1998)  Structural and dynamic effects of point mutations in the recognition helix of the glucocorticoid receptor DNA-binding domain. PRot. Eng. 11, 589-600.

 

Eriksson, M.A.L. & Nilsson, L. (1999)  Structural and dynamic differences of the estrogen receptor DNA-binding domain, binding as a dimer and as a monomer to DNA. Molecular dynamics simulation studies. Eur. J. Biophys. 28, 102-111.

 

Eriksson, M.A.L., Pitera, J. & Kollman, P.A. (1999) Prediction of the binding free energies of new TIBO-like HIV-1 reverse transcriptase inhibitors using a combination of PROFEC, PB/SA, CMC/MD and free energy calculations. J. Med. Chem. 42, 868-881.

 

Eriksson, M.A.L., Morgantini P.-Y., & Kollman, P. A. (1999) Binding of organic cations to A cyclophane host as studied with molecular dynamics simulations and free energy calculations. J. Phys. Chem. B, 103, 4474-4480.

 

Eriksson, M.A.L. & Roux, B. (2002) Modeling the structure of Agitoxin in complex with the Shaker K+ channel: a computational approach based on experimental distance restraints extracted from thermodynamic mutant cycles. Biophys. J. 83, 2595-2609.